Derive a saturating rate from bound-catalyst conservation
The supplied candidate has rapid reversible binding C+A⇌CA followed by slower CA→C+P.
Learning outcome: Compare A=.1,.5,1.0 M at Kd=.5 and then Kd=.1. Derive free/bound catalyst amounts and compare the exact rate with the low-A approximation and saturation ceiling.
Starting recap
Distinguish a net reaction coefficient, empirical exponent and elementary step. Refresh logarithmic ratios, signed residuals, concentration/time dimensions and parameter identifiability.
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At free A=.50 M,Kd=.50 M,total catalyst .0100 M and kcat2 s⁻¹, bound catalyst.00500 M gives rate.0100 M/s.
Open the experimentPredict
Can a catalyst-binding model predict indefinitely linear rate growth as free A becomes much larger than Kd?
Experiment
Compare A=.1,.5,1.0 M at Kd=.5 and then Kd=.1. Derive free/bound catalyst amounts and compare the exact rate with the low-A approximation and saturation ceiling.
Derive a bound-intermediate rate using catalyst conservation
Worked teaching model · synthetic values · Supplied rapid pre-equilibrium C+A⇌CA followed by slow CA→C+P. Total catalyst .0100 M, kcat = 2.00 s⁻¹, free A controlled externally. Kd=[C][A]/[CA]; conservation gives [CA]=Ctotal[A]/(Kd+[A]). Approximation assumes binding equilibrates faster than turnover; no enzyme/clinical or actual catalyst experiment.
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- Rapid-pre-equilibrium prediction: solid
Axes rescale. A concentration trajectory, initial-rate comparison and inverse-temperature plot have different horizontal meanings; use the labels rather than assuming every curve shows elapsed time.
All calculated plot coordinates
| free A concentration (mol/L) | initial product rate (mol/(L s)) |
|---|---|
| 0 | 0 |
| 0.02 | 0.0007692308 |
| 0.04 | 0.001481481 |
| 0.06 | 0.002142857 |
| 0.08 | 0.002758621 |
| 0.1 | 0.003333333 |
| 0.12 | 0.003870968 |
| 0.14 | 0.004375 |
| 0.16 | 0.004848485 |
| 0.18 | 0.005294118 |
| 0.2 | 0.005714286 |
| 0.22 | 0.006111111 |
| 0.24 | 0.006486486 |
| 0.26 | 0.006842105 |
| 0.28 | 0.007179487 |
| 0.3 | 0.0075 |
| 0.32 | 0.007804878 |
| 0.34 | 0.008095238 |
| 0.36 | 0.008372093 |
| 0.38 | 0.008636364 |
| 0.4 | 0.008888889 |
| 0.42 | 0.009130435 |
| 0.44 | 0.009361702 |
| 0.46 | 0.009583333 |
| 0.48 | 0.009795918 |
| 0.5 | 0.01 |
| 0.52 | 0.01019608 |
| 0.54 | 0.01038462 |
| 0.56 | 0.01056604 |
| 0.58 | 0.01074074 |
| 0.6 | 0.01090909 |
| 0.62 | 0.01107143 |
| 0.64 | 0.01122807 |
| 0.66 | 0.01137931 |
| 0.68 | 0.01152542 |
| 0.7 | 0.01166667 |
| 0.72 | 0.01180328 |
| 0.74 | 0.01193548 |
| 0.76 | 0.01206349 |
| 0.78 | 0.0121875 |
| 0.8 | 0.01230769 |
| 0.82 | 0.01242424 |
| 0.84 | 0.01253731 |
| 0.86 | 0.01264706 |
| 0.88 | 0.01275362 |
| 0.9 | 0.01285714 |
| 0.92 | 0.01295775 |
| 0.94 | 0.01305556 |
| 0.96 | 0.01315068 |
| 0.98 | 0.01324324 |
| 1 | 0.01333333 |
| 1.02 | 0.01342105 |
| 1.04 | 0.01350649 |
| 1.06 | 0.01358974 |
| 1.08 | 0.01367089 |
| 1.1 | 0.01375 |
| 1.12 | 0.01382716 |
| 1.14 | 0.01390244 |
| 1.16 | 0.0139759 |
| 1.18 | 0.01404762 |
| 1.2 | 0.01411765 |
| 1.22 | 0.01418605 |
| 1.24 | 0.01425287 |
| 1.26 | 0.01431818 |
| 1.28 | 0.01438202 |
| 1.3 | 0.01444444 |
| 1.32 | 0.01450549 |
| 1.34 | 0.01456522 |
| 1.36 | 0.01462366 |
| 1.38 | 0.01468085 |
| 1.4 | 0.01473684 |
| 1.42 | 0.01479167 |
| 1.44 | 0.01484536 |
| 1.46 | 0.01489796 |
| 1.48 | 0.01494949 |
| 1.5 | 0.015 |
| 1.52 | 0.0150495 |
| 1.54 | 0.01509804 |
| 1.56 | 0.01514563 |
| 1.58 | 0.01519231 |
| 1.6 | 0.0152381 |
| 1.62 | 0.01528302 |
| 1.64 | 0.0153271 |
| 1.66 | 0.01537037 |
| 1.68 | 0.01541284 |
| 1.7 | 0.01545455 |
| 1.72 | 0.0154955 |
| 1.74 | 0.01553571 |
| 1.76 | 0.01557522 |
| 1.78 | 0.01561404 |
| 1.8 | 0.01565217 |
| 1.82 | 0.01568966 |
| 1.84 | 0.0157265 |
| 1.86 | 0.01576271 |
| 1.88 | 0.01579832 |
| 1.9 | 0.01583333 |
| 1.92 | 0.01586777 |
| 1.94 | 0.01590164 |
| 1.96 | 0.01593496 |
| 1.98 | 0.01596774 |
| 2 | 0.016 |
| Quantity | Value | Unit |
|---|---|---|
| Bound catalyst CA | 0.005 | mol/L |
| Free catalyst C | 0.005 | mol/L |
| Total catalyst inventory | 0.01 | mol/L |
| Product formation rate | 0.01 | mol/(L s) |
| Low-A linear approximation | 0.02 | mol/(L s) |
| Saturation-rate ceiling | 0.02 | mol/(L s) |
Catalyst conservation produces saturation instead of unlimited linear rate growth.
Solve Kd=[C][A]/[CA] with [C]+[CA]=Ctotal before substituting r=kcat[CA]. At A much smaller than Kd the rate is approximately first order in A; at A much larger it approaches zero-order dependence. A matching curve supports a candidate model, not a unique microscopic mechanism; the pre-equilibrium time-scale assumption needs independent evidence.
These calculated packets are not performed chemical or instrument measurements. Keep the hypothesis, fitting observations, withheld checks and exposure record distinct.
Catalyst conservation produces saturation instead of unlimited linear rate growth.
Solve Kd=[C][A]/[CA] with [C]+[CA]=Ctotal before substituting r=kcat[CA]. At A much smaller than Kd the rate is approximately first order in A; at A much larger it approaches zero-order dependence. A matching curve supports a candidate model, not a unique microscopic mechanism; the pre-equilibrium time-scale assumption needs independent evidence.
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Which independent time-scale or species evidence would be needed before calling the rapid pre-equilibrium mechanism established?
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